Weasis Compression - the saga goes on

jwest · Jan 21st 2014

Mr Marcel,

When I enable compression at lua xml, the images in weasis are loading and next disappear.
All my images on conquest server are uncompressed.

I have enabled in dgatesop.lst:
JPEG2000LosslessOnly 1.2.840.10008.1.2.4.90 transfer LittleEndianExplicit
JPEG2000 1.2.840.10008.1.2.4.91 transfer LittleEndianExplicit

I did tests with:
JPEG2000LosslessOnly 1.2.840.10008.1.2.4.90 transfer LittleEndianExplicit
JPEG2000 1.2.840.10008.1.2.4.91 transfer LittleEndianExplicit
and the problem occurs in both cases.

I also tried change .cq file to include transfersyntax without success. The same problem occurs.

I enabled compression in weasisseriesxml.lua as:

Code

print('Content-Type: application/xml\n')local patid = string.gsub(series2, ':.*$', '')local seriesuid = string.gsub(series2, '^.*:', '')local q = DicomObject:new()q.QueryRetrieveLevel = 'IMAGE'q.PatientID = patidq.SeriesInstanceUID = seriesuidq.SOPInstanceUID = ''q.PatientBirthDate = ''q.PatientName = ''q.StudyInstanceUID = ''q.StudyDescription = ''q.StudyDate = ''q.StudyTime = ''q.SeriesDescription = ''q.SeriesNumber = ''q.Modality = ''q.ImageNumber = ''r = dicomquery(servercommand('get_param:MyACRNema'), 'IMAGE', q)print([[<?xml version="1.0" encoding="utf-8" ?><wado_query xmlns= "http://www.weasis.org/xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" wadoURL="]]..webscriptadress..[[" requireOnlySOPInstanceUID="false" overrideDicomTagsList="0x00000000" >  <Patient PatientID="]]..patid..[[" PatientName="]]..r[0].PatientName..[[" PatientBirthDate="]]..r[0].PatientBirthDate..[[" >    <Study StudyInstanceUID="]]..r[0].StudyInstanceUID..[[" StudyDescription="]]..r[0].StudyDescription..[[" StudyDate="]]..r[0].StudyDate..[[" StudyTime="]]..r[0].StudyTime..[[" >      <Series SeriesInstanceUID="]]..r[0].SeriesInstanceUID..[[" SeriesDescription="]]..r[0].SeriesDescription..[[" SeriesNumber="]]..r[0].SeriesNumber..[[" Modality="]]..r[0].Modality..[[" WadoTransferSyntaxUID="]].."1.2.840.10008.1.2.4.90"..[[" >]])for i=0, #r-1 do  print([[<Instance SOPInstanceUID="]]..r[i].SOPInstanceUID..[[" InstanceNumber="]]..i..[[" />]])endprint([[      </Series>    </Study>  </Patient></wado_query>]])

Here is the log from conquest server:

Code

[CONQUESTSRV1] 0000,0110      2 US MessageID              1 [CONQUESTSRV1] 0000,0800      2 US DataSetType            257 [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] 9999,0400     20 LO ConquestConsoleComma   "get_param:MyACRNema" [CONQUESTSRV1] Connected by address: 020aa8c0[CONQUESTSRV1] Testing transfer: '1.2.840.10008.1.2' against list #0 = '1.2.840.10008.1.2'[CONQUESTSRV1] [CONQUESTSRV1] UPACS THREAD 2516: STARTED AT: Tue Jan 21 22:15:17 2014[CONQUESTSRV1] A-ASSOCIATE-RQ Packet Dump[CONQUESTSRV1]  Calling Application Title : "CONQUESTSRV1    "[CONQUESTSRV1]  Called Application Title : "CONQUESTSRV1    "[CONQUESTSRV1]  Application Context : "1.2.840.10008.3.1.1.1", PDU length: 16384[CONQUESTSRV1]  Number of Proposed Presentation Contexts: 1[CONQUESTSRV1]  Presentation Context 0 "1.2.840.10008.5.1.4.1.2.2.1" 1[CONQUESTSRV1] Server Command   := 0020[CONQUESTSRV1] Message ID       := 001b[CONQUESTSRV1] 0000,0002     28 UI AffectedSOPClassUID    "1.2.840.10008.5.1.4.1.2.2.1" [CONQUESTSRV1] 0000,0100      2 US CommandField           32 [CONQUESTSRV1] 0000,0110      2 US MessageID              27 [CONQUESTSRV1] 0000,0700      2 US Priority               0 [CONQUESTSRV1] 0000,0800      2 US DataSetType            258 [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] (StudyRootQuery) search level: IMAGE [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] 0008,0018      0 UI SOPInstanceUID         (empty)[CONQUESTSRV1] 0008,0020      0 DA StudyDate              (empty)[CONQUESTSRV1] 0008,0030      0 TM StudyTime              (empty)[CONQUESTSRV1] 0008,0052      6 CS QueryRetrieveLevel     "IMAGE " [CONQUESTSRV1] 0008,0060      0 CS Modality               (empty)[CONQUESTSRV1] 0008,1030      0 LO StudyDescription       (empty)[CONQUESTSRV1] 0008,103e      0 LO SeriesDescription      (empty)[CONQUESTSRV1] 0010,0010      0 PN PatientName            (empty)[CONQUESTSRV1] 0010,0020      6 LO PatientID              "184152" [CONQUESTSRV1] 0010,0030      0 DA PatientBirthDate       (empty)[CONQUESTSRV1] 0020,000d      0 UI StudyInstanceUID       (empty)[CONQUESTSRV1] 0020,000e     52 UI SeriesInstanceUID      "1.3.46.670589.30.1.6.1.116520970982.1387821732718.1" [CONQUESTSRV1] 0020,0011      0 IS SeriesNumber           (empty)[CONQUESTSRV1] 0020,0013      0 IS ImageNumber            (empty)[CONQUESTSRV1] Query On Image[CONQUESTSRV1] Issue Query on Columns: DICOMImages.SOPInstanc, DICOMImages.ImageNumbe, DICOMSeries.Modality, DICOMSeries.SeriesDesc, DICOMSeries.SeriesInst, DICOMSeries.SeriesNumb, DICOMStudies.StudyDate, DICOMStudies.StudyTime, DICOMStudies.StudyDescr, DICOMStudies.PatientNam, DICOMStudies.PatientID, DICOMStudies.PatientBir, DICOMStudies.StudyInsta[CONQUESTSRV1] Values: DICOMSeries.SeriesInst = '1.3.46.670589.30.1.6.1.116520970982.1387821732718.1' and DICOMStudies.PatientID = '184152' and DICOMSeries.StudyInsta = DICOMStudies.StudyInsta and DICOMImages.SeriesInst = DICOMSeries.SeriesInst[CONQUESTSRV1] Tables: DICOMImages, DICOMSeries, DICOMStudies[CONQUESTSRV1] Query Distinct Tables: DICOMImages, DICOMSeries, DICOMStudies[CONQUESTSRV1] Columns              : DICOMImages.SOPInstanc, DICOMImages.ImageNumbe, DICOMSeries.Modality, DICOMSeries.SeriesDesc, DICOMSeries.SeriesInst, DICOMSeries.SeriesNumb, DICOMStudies.StudyDate, DICOMStudies.StudyTime, DICOMStudies.StudyDescr, DICOMStudies.PatientNam, DICOMStudies.PatientID, DICOMStudies.PatientBir, DICOMStudies.StudyInsta[CONQUESTSRV1] Where                : DICOMSeries.SeriesInst = '1.3.46.670589.30.1.6.1.116520970982.1387821732718.1' and DICOMStudies.PatientID = '184152' and DICOMSeries.StudyInsta = DICOMStudies.StudyInsta and DICOMImages.SeriesInst = DICOMSeries.SeriesInst[CONQUESTSRV1] Order                : (null)[CONQUESTSRV1] Records = 1[CONQUESTSRV1] First record of cleaned response:[CONQUESTSRV1] 0008,0018     52 UI SOPInstanceUID         "1.3.46.670589.30.1.6.1.116520970982.1387821732640.2" [CONQUESTSRV1] 0008,0020      8 DA StudyDate              "20131223" [CONQUESTSRV1] 0008,0030     14 TM StudyTime              "160034.312000 " [CONQUESTSRV1] 0008,0060      2 CS Modality               "CR" [CONQUESTSRV1] 0008,1030     14 LO StudyDescription       "Coluna lombar " [CONQUESTSRV1] 0008,103e      2 LO SeriesDescription      "AP" [CONQUESTSRV1] 0010,0010     14 PN PatientName            ".RENATO BASTOS" [CONQUESTSRV1] 0010,0020      6 LO PatientID              "184152" [CONQUESTSRV1] 0010,0030      0 DA PatientBirthDate       (empty)[CONQUESTSRV1] 0020,000d     52 UI StudyInstanceUID       "1.3.46.670589.30.1.6.1.116520970982.1387821468515.1" [CONQUESTSRV1] 0020,000e     52 UI SeriesInstanceUID      "1.3.46.670589.30.1.6.1.116520970982.1387821732718.1" [CONQUESTSRV1] 0020,0011      2 IS SeriesNumber           "1 " [CONQUESTSRV1] 0020,0013      2 IS ImageNumber            "1 " [CONQUESTSRV1] C-Find (StudyRoot) located 1 records[CONQUESTSRV1] UPACS THREAD 2516: ENDED AT: Tue Jan 21 22:15:17 2014[CONQUESTSRV1] UPACS THREAD 2516: TOTAL RUNNING TIME: 0 SECONDS[CONQUESTSRV1] Connected by address: 020aa8c0[CONQUESTSRV1] Connected by address: 020aa8c0[CONQUESTSRV1] Testing transfer: '1.2.840.10008.1.2' against list #0 = '1.2.840.10008.1.2'[CONQUESTSRV1] Testing transfer: '1.2.840.10008.1.2' against list #0 = '1.2.840.10008.1.2'[CONQUESTSRV1] 0000,0002     18 UI AffectedSOPClassUID    "1.2.840.10008.1.1" [CONQUESTSRV1] 0000,0100      2 US CommandField           48 [CONQUESTSRV1] 0000,0110      2 US MessageID              1 [CONQUESTSRV1] 0000,0800      2 US DataSetType            257 [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] 9999,0400    224 LO ConquestConsoleComma   "wadorequest:1.3.46.670589.30.1.6.1.116520970982.1387821468515.1\\1.3.46.670589.30.1.6.1.116520970982.1387821732718.1\\1.3.46.670589.30.1.6.1.116520970982.1387821732640.2,0/0/0/0,0/0,,application/dicom,1.2.840.10008.1.2.4.90,,," [CONQUESTSRV1] Query Tables: DICOMImages[CONQUESTSRV1] Columns     : ObjectFile, DeviceName[CONQUESTSRV1] Where       : SOPInstanc = '1.3.46.670589.30.1.6.1.116520970982.1387821732640.2' AND SeriesInst = '1.3.46.670589.30.1.6.1.116520970982.1387821732718.1'[CONQUESTSRV1] Order       : (null)[CONQUESTSRV1] 0000,0002     18 UI AffectedSOPClassUID    "1.2.840.10008.1.1" [CONQUESTSRV1] 0000,0100      2 US CommandField           48 [CONQUESTSRV1] 0000,0110      2 US MessageID              1 [CONQUESTSRV1] 0000,0800      2 US DataSetType            257 [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] 9999,0400    200 LO ConquestConsoleComma   "wadorequest:1.3.46.670589.30.1.6.1.116520970982.1387821468515.1\\1.3.46.670589.30.1.6.1.116520970982.1387821732718.1\\1.3.46.670589.30.1.6.1.116520970982.1387821732640.2,0/0/0/70,256/256,,image/jpeg,,,," [CONQUESTSRV1] Query Tables: DICOMImages[CONQUESTSRV1] Columns     : ObjectFile, DeviceName[CONQUESTSRV1] Where       : SOPInstanc = '1.3.46.670589.30.1.6.1.116520970982.1387821732640.2' AND SeriesInst = '1.3.46.670589.30.1.6.1.116520970982.1387821732718.1'[CONQUESTSRV1] Order       : (null)[CONQUESTSRV1] Locating file:MAG0 184152\1.3.46.670589.30.1.6.1.116520970982.1387821732718.1_0001_000001_138782377104cd.dcm[CONQUESTSRV1] Locating file:MAG0 184152\1.3.46.670589.30.1.6.1.116520970982.1387821732718.1_0001_000001_138782377104cd.dcm[CONQUESTSRV1] Jasper compress started.[CONQUESTSRV1] JPEG2K Lossless[CONQUESTSRV1] , buffered data[CONQUESTSRV1] , planes[CONQUESTSRV1] , H = 1671, W = 1671, Bits = 12 in 16, Frames = 1, [CONQUESTSRV1] color = MONOCHROME2 [CONQUESTSRV1] Jasper compress time 2 seconds.[CONQUESTSRV1] [recompress]: recompressed with mode = jk (strip=0)[CONQUESTSRV1] Connected by address: 020aa8c0[CONQUESTSRV1] Testing transfer: '1.2.840.10008.1.2' against list #0 = '1.2.840.10008.1.2'[CONQUESTSRV1] 0000,0002     18 UI AffectedSOPClassUID    "1.2.840.10008.1.1" [CONQUESTSRV1] 0000,0100      2 US CommandField           48 [CONQUESTSRV1] 0000,0110      2 US MessageID              1 [CONQUESTSRV1] 0000,0800      2 US DataSetType            257 [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] 9999,0400     20 LO ConquestConsoleComma   "get_param:MyACRNema" [CONQUESTSRV1] Connected by address: 020aa8c0[CONQUESTSRV1] Testing transfer: '1.2.840.10008.1.2' against list #0 = '1.2.840.10008.1.2'[CONQUESTSRV1] [CONQUESTSRV1] UPACS THREAD 2520: STARTED AT: Tue Jan 21 22:15:56 2014[CONQUESTSRV1] A-ASSOCIATE-RQ Packet Dump[CONQUESTSRV1]  Calling Application Title : "CONQUESTSRV1    "[CONQUESTSRV1]  Called Application Title : "CONQUESTSRV1    "[CONQUESTSRV1]  Application Context : "1.2.840.10008.3.1.1.1", PDU length: 16384[CONQUESTSRV1]  Number of Proposed Presentation Contexts: 1[CONQUESTSRV1]  Presentation Context 0 "1.2.840.10008.5.1.4.1.2.2.1" 1[CONQUESTSRV1] Server Command   := 0020[CONQUESTSRV1] Message ID       := 001b[CONQUESTSRV1] 0000,0002     28 UI AffectedSOPClassUID    "1.2.840.10008.5.1.4.1.2.2.1" [CONQUESTSRV1] 0000,0100      2 US CommandField           32 [CONQUESTSRV1] 0000,0110      2 US MessageID              27 [CONQUESTSRV1] 0000,0700      2 US Priority               0 [CONQUESTSRV1] 0000,0800      2 US DataSetType            258 [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] (StudyRootQuery) search level: IMAGE [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] 0008,0018      0 UI SOPInstanceUID         (empty)[CONQUESTSRV1] 0008,0020      0 DA StudyDate              (empty)[CONQUESTSRV1] 0008,0030      0 TM StudyTime              (empty)[CONQUESTSRV1] 0008,0052      6 CS QueryRetrieveLevel     "IMAGE " [CONQUESTSRV1] 0008,0060      0 CS Modality               (empty)[CONQUESTSRV1] 0008,1030      0 LO StudyDescription       (empty)[CONQUESTSRV1] 0008,103e      0 LO SeriesDescription      (empty)[CONQUESTSRV1] 0010,0010      0 PN PatientName            (empty)[CONQUESTSRV1] 0010,0020      6 LO PatientID              "184152" [CONQUESTSRV1] 0010,0030      0 DA PatientBirthDate       (empty)[CONQUESTSRV1] 0020,000d      0 UI StudyInstanceUID       (empty)[CONQUESTSRV1] 0020,000e     52 UI SeriesInstanceUID      "1.3.46.670589.30.1.6.1.116520970982.1387821732718.1" [CONQUESTSRV1] 0020,0011      0 IS SeriesNumber           (empty)[CONQUESTSRV1] 0020,0013      0 IS ImageNumber            (empty)[CONQUESTSRV1] Query On Image[CONQUESTSRV1] Issue Query on Columns: DICOMImages.SOPInstanc, DICOMImages.ImageNumbe, DICOMSeries.Modality, DICOMSeries.SeriesDesc, DICOMSeries.SeriesInst, DICOMSeries.SeriesNumb, DICOMStudies.StudyDate, DICOMStudies.StudyTime, DICOMStudies.StudyDescr, DICOMStudies.PatientNam, DICOMStudies.PatientID, DICOMStudies.PatientBir, DICOMStudies.StudyInsta[CONQUESTSRV1] Values: DICOMSeries.SeriesInst = '1.3.46.670589.30.1.6.1.116520970982.1387821732718.1' and DICOMStudies.PatientID = '184152' and DICOMSeries.StudyInsta = DICOMStudies.StudyInsta and DICOMImages.SeriesInst = DICOMSeries.SeriesInst[CONQUESTSRV1] Tables: DICOMImages, DICOMSeries, DICOMStudies[CONQUESTSRV1] Query Distinct Tables: DICOMImages, DICOMSeries, DICOMStudies[CONQUESTSRV1] Columns              : DICOMImages.SOPInstanc, DICOMImages.ImageNumbe, DICOMSeries.Modality, DICOMSeries.SeriesDesc, DICOMSeries.SeriesInst, DICOMSeries.SeriesNumb, DICOMStudies.StudyDate, DICOMStudies.StudyTime, DICOMStudies.StudyDescr, DICOMStudies.PatientNam, DICOMStudies.PatientID, DICOMStudies.PatientBir, DICOMStudies.StudyInsta[CONQUESTSRV1] Where                : DICOMSeries.SeriesInst = '1.3.46.670589.30.1.6.1.116520970982.1387821732718.1' and DICOMStudies.PatientID = '184152' and DICOMSeries.StudyInsta = DICOMStudies.StudyInsta and DICOMImages.SeriesInst = DICOMSeries.SeriesInst[CONQUESTSRV1] Order                : (null)[CONQUESTSRV1] Records = 1[CONQUESTSRV1] First record of cleaned response:[CONQUESTSRV1] 0008,0018     52 UI SOPInstanceUID         "1.3.46.670589.30.1.6.1.116520970982.1387821732640.2" [CONQUESTSRV1] 0008,0020      8 DA StudyDate              "20131223" [CONQUESTSRV1] 0008,0030     14 TM StudyTime              "160034.312000 " [CONQUESTSRV1] 0008,0060      2 CS Modality               "CR" [CONQUESTSRV1] 0008,1030     14 LO StudyDescription       "Coluna lombar " [CONQUESTSRV1] 0008,103e      2 LO SeriesDescription      "AP" [CONQUESTSRV1] 0010,0010     14 PN PatientName            ".RENATO BASTOS" [CONQUESTSRV1] 0010,0020      6 LO PatientID              "184152" [CONQUESTSRV1] 0010,0030      0 DA PatientBirthDate       (empty)[CONQUESTSRV1] 0020,000d     52 UI StudyInstanceUID       "1.3.46.670589.30.1.6.1.116520970982.1387821468515.1" [CONQUESTSRV1] 0020,000e     52 UI SeriesInstanceUID      "1.3.46.670589.30.1.6.1.116520970982.1387821732718.1" [CONQUESTSRV1] 0020,0011      2 IS SeriesNumber           "1 " [CONQUESTSRV1] 0020,0013      2 IS ImageNumber            "1 " [CONQUESTSRV1] C-Find (StudyRoot) located 1 records[CONQUESTSRV1] UPACS THREAD 2520: ENDED AT: Tue Jan 21 22:15:56 2014[CONQUESTSRV1] UPACS THREAD 2520: TOTAL RUNNING TIME: 0 SECONDS[CONQUESTSRV1] Connected by address: 020aa8c0[CONQUESTSRV1] Connected by address: 020aa8c0[CONQUESTSRV1] Testing transfer: '1.2.840.10008.1.2' against list #0 = '1.2.840.10008.1.2'[CONQUESTSRV1] Testing transfer: '1.2.840.10008.1.2' against list #0 = '1.2.840.10008.1.2'[CONQUESTSRV1] 0000,0002     18 UI AffectedSOPClassUID    "1.2.840.10008.1.1" [CONQUESTSRV1] 0000,0100      2 US CommandField           48 [CONQUESTSRV1] 0000,0110      2 US MessageID              1 [CONQUESTSRV1] 0000,0800      2 US DataSetType            257 [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] 9999,0400    200 LO ConquestConsoleComma   "wadorequest:1.3.46.670589.30.1.6.1.116520970982.1387821468515.1\\1.3.46.670589.30.1.6.1.116520970982.1387821732718.1\\1.3.46.670589.30.1.6.1.116520970982.1387821732640.2,0/0/0/70,256/256,,image/jpeg,,,," [CONQUESTSRV1] Query Tables: DICOMImages[CONQUESTSRV1] Columns     : ObjectFile, DeviceName[CONQUESTSRV1] Where       : SOPInstanc = '1.3.46.670589.30.1.6.1.116520970982.1387821732640.2' AND SeriesInst = '1.3.46.670589.30.1.6.1.116520970982.1387821732718.1'[CONQUESTSRV1] Order       : (null)[CONQUESTSRV1] 0000,0002     18 UI AffectedSOPClassUID    "1.2.840.10008.1.1" [CONQUESTSRV1] 0000,0100      2 US CommandField           48 [CONQUESTSRV1] 0000,0110      2 US MessageID              1 [CONQUESTSRV1] 0000,0800      2 US DataSetType            257 [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] 9999,0400    224 LO ConquestConsoleComma   "wadorequest:1.3.46.670589.30.1.6.1.116520970982.1387821468515.1\\1.3.46.670589.30.1.6.1.116520970982.1387821732718.1\\1.3.46.670589.30.1.6.1.116520970982.1387821732640.2,0/0/0/0,0/0,,application/dicom,1.2.840.10008.1.2.4.90,,," [CONQUESTSRV1] Query Tables: DICOMImages[CONQUESTSRV1] Columns     : ObjectFile, DeviceName[CONQUESTSRV1] Where       : SOPInstanc = '1.3.46.670589.30.1.6.1.116520970982.1387821732640.2' AND SeriesInst = '1.3.46.670589.30.1.6.1.116520970982.1387821732718.1'[CONQUESTSRV1] Order       : (null)[CONQUESTSRV1] Locating file:MAG0 184152\1.3.46.670589.30.1.6.1.116520970982.1387821732718.1_0001_000001_138782377104cd.dcm[CONQUESTSRV1] Locating file:MAG0 184152\1.3.46.670589.30.1.6.1.116520970982.1387821732718.1_0001_000001_138782377104cd.dcm[CONQUESTSRV1] Jasper compress started.[CONQUESTSRV1] JPEG2K Lossless[CONQUESTSRV1] , buffered data[CONQUESTSRV1] , planes[CONQUESTSRV1] , H = 1671, W = 1671, Bits = 12 in 16, Frames = 1, [CONQUESTSRV1] color = MONOCHROME2 [CONQUESTSRV1] Jasper compress time 2 seconds.[CONQUESTSRV1] [recompress]: recompressed with mode = jk (strip=0)

and here is the log of java console:

Code

Java Web Start 10.45.2.18
Usando a versão do JRE 1.7.0_45-b18 Java HotSpot(TM) Client VM
Diretório home do usuário = C:\Documents and Settings\Luiz
----------------------------------------------------
c:   limpar janela da console
f:   concluir objetos da fila de finalização
g:   coleta de lixo
h:   exibir esta mensagem de ajuda
m:   imprimir uso de memória
o:   log do trigger
p:   recarregar configuração do proxy
q:   ocultar console
r:   recarregar configuração da política
s:   descartar propriedades do sistema e de implantação
t:   descartar lista de threads
v:   descartar pilha de threads
0-5: definir nível de rastreamento como <n>
----------------------------------------------------


***** Starting Configuration *****
Operating system: windows-x86
Installation directory: C:\Documents and Settings\Luiz\.weasis
weasis.language: pt
weasis.country: BR
weasis.variant: 
weasis.confirm.closing: true
weasis.export.dicom: true
org.apache.sling.commons.log.level: INFO
org.apache.sling.commons.log.file: 
org.apache.sling.commons.log.file.number: 5
org.apache.sling.commons.log.file.size: 10MB
org.apache.sling.commons.log.pattern: {0,date,dd.MM.yyyy HH:mm:ss.SSS} *{4}* [{2}] {3} {5}
weasis.look: org.pushingpixels.substance.api.skin.SubstanceTwilightLookAndFeel
Last running version: 1.2.7
Current version: 1.2.7
***** End of Configuration *****


Weasis Starting...
========================


Uninstall not used: weasis-dicom-explorer-i18n-1.1.0
Uninstall not used: weasis-core-ui-i18n-1.1.0
Uninstall not used: weasis-core-api-i18n-1.1.0
Uninstall not used: weasis-base-ui-i18n-1.1.0
Uninstall not used: weasis-base-viewer2d-i18n-1.1.0
Uninstall not used: weasis-dicom-viewer2d-i18n-1.1.0
Uninstall not used: weasis-dicom-codec-i18n-1.1.0
21.01.2014 22:24:03.929 *INFO* [FelixStartLevel] org.apache.sling.commons.log.internal.LogManager LogManager: Logging set up from context
____________________________
Welcome to Apache Felix Gogo


telnetd is running on 127.0.0.1:17179
21.01.2014 22:24:04.726 *INFO* [FelixStartLevel] org.weasis.core.api.internal.Activator Register Codec Plug-in: Sun java imageio
21.01.2014 22:24:04.741 *INFO* [FelixStartLevel] org.weasis.core.api.internal.Activator Register Codec Plug-in: dcm4che
21.01.2014 22:24:05.132 *INFO* [AWT-EventQueue-2] org.weasis.base.ui.gui.WeasisWin End of loading the GUI...
21.01.2014 22:24:05.788 *INFO* [pool-1-thread-1] org.weasis.dicom.explorer.wado.DownloadManager Downloading WADO references: http://xxxx.myvnc.com/cgi-bin/dgate.exe?port=3010&address=192.168.10.7&mode=weasisseriesxml&series=223814:1.3.46.670589.30.1.3.1.116520970982.1325705583000.1&dum=.xml
21.01.2014 22:24:08.054 *INFO* [pool-1-thread-1] org.weasis.dicom.explorer.wado.DownloadManager [Validate with XSD schema] wado_query is valid
21.01.2014 22:24:08.070 *INFO* [pool-1-thread-1] org.weasis.dicom.explorer.wado.DownloadManager Adding new patient: xxxx
21.01.2014 22:24:08.070 *INFO* [pool-2-thread-1] org.weasis.dicom.explorer.wado.LoadSeries Downloading series of xxx[1.3.46.670589.30.1.3.1.116520970982.1325705583000.1]
21.01.2014 22:24:08.070 *INFO* [AWT-EventQueue-2] org.weasis.dicom.explorer.DicomExplorer Add series: 1.3.46.670589.30.1.3.1.116520970982.1325705583000.1
java.io.EOFException
	at org.dcm4che2.io.DicomInputStream.readBytes(DicomInputStream.java)
	at org.dcm4che2.io.DicomInputStream.readValue(DicomInputStream.java)
	at org.dcm4che2.io.StopTagInputHandler.readValue(StopTagInputHandler.java)
	at org.dcm4che2.io.DicomInputStream.parse(DicomInputStream.java)
	at org.dcm4che2.io.DicomInputStream.readDicomObject(DicomInputStream.java)
	at org.dcm4che2.io.DicomInputStream.readItemValue(DicomInputStream.java)
	at org.dcm4che2.io.DicomInputStream.readValue(DicomInputStream.java)
	at org.dcm4che2.io.StopTagInputHandler.readValue(StopTagInputHandler.java)
	at org.dcm4che2.io.DicomInputStream.parse(DicomInputStream.java)
	at org.dcm4che2.io.DicomInputStream.readItems(DicomInputStream.java)
	at org.dcm4che2.io.DicomInputStream.readValue(DicomInputStream.java)
	at org.dcm4che2.io.StopTagInputHandler.readValue(StopTagInputHandler.java)
	at org.dcm4che2.io.DicomInputStream.parse(DicomInputStream.java)
	at org.dcm4che2.io.DicomInputStream.readDicomObject(DicomInputStream.java)
	at org.dcm4che2.io.DicomInputStream.readDicomObject(DicomInputStream.java)
	at org.weasis.dicom.explorer.wado.LoadSeries$Download.writFile(LoadSeries.java)
	at org.weasis.dicom.explorer.wado.LoadSeries$Download.call(LoadSeries.java)
	at org.weasis.dicom.explorer.wado.LoadSeries$Download.call(LoadSeries.java)
	at java.util.concurrent.FutureTask.run(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.lang.Thread.run(Unknown Source)
21.01.2014 22:24:15.210 *WARN* [pool-5-thread-1] org.weasis.dicom.explorer.wado.LoadSeries Download interruption http://xxxx.myvnc.com/cgi-bin/dgate.exe?requestType=WADO&studyUID=1.3.46.670589.30.1.3.1.116520970982.1325705451359.1&seriesUID=1.3.46.670589.30.1.3.1.116520970982.1325705583000.1&objectUID=1.3.46.670589.30.1.3.1.116520970982.1325705582953.2&contentType=application%2Fdicom&transferSyntax=1.2.840.10008.1.2.4.90 
21.01.2014 22:24:15.257 *INFO* [AWT-EventQueue-2] org.weasis.dicom.explorer.DicomModel Remove Patient: xxx
21.01.2014 22:24:15.257 *INFO* [AWT-EventQueue-2] org.weasis.dicom.explorer.DicomModel Remove Study: 04/01/2012 00:00:00

Display More

Any help will be appreciated.

Thanks in advance,

Luiz

marcelvanherk · Jan 22nd 2014

Hi Luiz, thanks for sharing this,

I had trouble even enabling compression for weasis due to lack of documentation. Did you try any other compression modes expect jpeg2000?

I will try to reproduce the issue.

Marcel

jwest · Jan 22nd 2014

Marcel,

Yes,

I also used ..[[" WadoTransferSyntaxUID="]].."1.2.840.10008.1.2.4.91"..[[" WadoCompressionRate="]].."75"..[[" >
The problem is the same.

I generate this sample with altova from weasis xsd schema. Does it can help you?:

XML

<?xml version="1.0" encoding="UTF-8"?>
<!--Sample XML file generated by XMLSpy v2008 sp1 (http://www.altova.com)-->
<wado_query overrideDicomTagsList="" wadoURL="http://www.altova.com" additionnalParameters="String" requireOnlySOPInstanceUID="true" webLogin="String" xsi:schemaLocation="http://www.weasis.org/xsd Untitled1.xml" xmlns="http://www.weasis.org/xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
	<httpTag value="String" key="String"/>
	<Message title="String" severity="INFO" description="String"/>
	<Patient PatientID="aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa" PatientBirthDate="2001" PatientSex="M" PatientBirthTime="00" PatientName="aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa" IssuerOfPatientID="aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa">
		<Study StudyDate="2001" ReferringPhysicianName="aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa" StudyTime="00" StudyInstanceUID="" StudyID="aaaaaaaaaaaaaaaa" AccessionNumber="aaaaaaaaaaaaaaaa" StudyDescription="aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa">
			<Series SeriesInstanceUID="" WadoTransferSyntaxUID="String" TransferSyntaxUID="" Modality="" SeriesDescription="aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa" SeriesNumber="0" WadoCompressionRate="0" DirectDownloadThumbnail="String">
				<Instance SOPInstanceUID="" InstanceNumber="0" TransferSyntaxUID="" DirectDownloadFile="String"/>
			</Series>
		</Study>
	</Patient>
</wado_query>

Display More

Luiz

marcelvanherk · Jan 22nd 2014

Hi,

If I type into my browser's address bar, e.g., :

http://127.0.0.1/cgi-bin/dgate…ax=1.2.840.10008.1.2.4.57

I.e., a proper WADO request with "&transferSyntax=1.2.840.10008.1.2.4.57" appended, the browser saves a file called dgate.exe, which is in reality a proper jpg compressed image. Can you try to do this with your data and see if such a file loads directly into weasis after renaming?

In my case I can load it into Weasis as file allright. I have not yet tried to do this directly over WADO due to lack of time.

EDIT: you are on version 1.4.17C ?

Thanks,

Marcel

jwest · Jan 22nd 2014

Mr Marcel,

I tried:

http://mysite.myvnc.com/cgi-bi…ax=1.2.840.10008.1.2.4.90

I received a prompt to download dgate.exe.
I downloaded it and rename it to dgate.jpg .
Then, I tried open it with paintbrush and ms picture manager without sucsess.

I think the file is corrupted.

Luiz

marcelvanherk · Jan 23rd 2014

Hi,

it is not jpg is is jpeg2000 compressed dcm. You need to rename it to ....dcm and open it e.g. in weasis.

Marcel

jwest · Jan 23rd 2014

Mr Marcel,

I rename it to dgate.dcm and weasis is unable to open it. Nothing is showing in weasis.
I tried open other dcm from conquest install and it opens ok, but the dgate.dcm doesn´t shows in weasis.

I think it is corrupted.

Regards,
Luiz

marcelvanherk · Jan 23rd 2014

Can you - as i asked - also try:

"&transferSyntax=1.2.840.10008.1.2.4.57"

This is normal (old) jpeg compressed dicom. Does weasis even support jpeg2000 out of the box?

Marcel

jwest · Jan 23rd 2014

Mr Marcel,
With "&transferSyntax=1.2.840.10008.1.2.4.57", I received a prompt to download dgate.exe
After the download, I rename it to dgate.dcm and Weasis was able to open it correctly.

>> Does weasis even support jpeg2000 out of the box?
I dont´know, But at http://www.dcm4che.org/conflue…lay/WEA/Dicom+Conformance we have for Weasis Dicom TransferSyntax:

Quote

Platform Compatibility of DICOM Transfer Syntax
Transfer Syntax UID Description Windows 32 bits Windows 64 bits Linux 32 bits Linux 64 bits Mac OS X 32/64 bits Other
1.2.840.10008.1.2 Implicit VR - Little Endian yes yes yes yes yes yes
1.2.840.10008.1.2.1 Explicit VR - Little Endian yes yes yes yes yes yes
1.2.840.10008.1.2.2 Explicit VR - Big Endian yes yes yes yes yes yes
1.2.840.10008.1.2.5 RLE (Run Length Encoding) Lossless yes yes yes yes yes yes
1.2.840.10008.1.2.4.50 JPEG Baseline (Process 1): Default Transfer Syntax for Lossy JPEG 8 Bit Image Compression yes yes yes yes yes yes
1.2.840.10008.1.2.4.51 JPEG Extended (Process 2 & 4): Default Transfer Syntax for Lossy JPEG 12 Bit Image Compression (Process 4 only) yes no yes yes no no
1.2.840.10008.1.2.4.57 JPEG Lossless, Non-Hierarchical (Process 14) yes no yes yes no no
1.2.840.10008.1.2.4.70 JPEG Lossless, Non-Hierarchical, First-Order Prediction (Process 14 [Selection Value 1]): Default Transfer Syntax for Lossless JPEG Image Compression yes no yes yes no no
1.2.840.10008.1.2.4.80 JPEG-LS Lossless Image Compression yes no yes yes no no
1.2.840.10008.1.2.4.81 JPEG-LS Lossy (Near-Lossless) Image Compression yes no yes yes no no
1.2.840.10008.1.2.4.90 JPEG 2000 Image Compression (Lossless Only) yes yes* yes yes yes* yes*
1.2.840.10008.1.2.4.91 JPEG 2000 Image Compression yes yes* yes yes yes* yes*

* No native acceleration (pure Java only)

Display More

At http://forums.dcm4che.org/jive…pa?threadID=3106&tstart=0 it seems other user have success with jpeg2000 lossless

Regards,
Luiz

marcelvanherk · Jan 23rd 2014

Hi Luiz,

thanks, then the question is if 1.2.840.10008.1.2.4.57 would work if asked from Weasis directly.

Marcel

marcelvanherk · Jan 23rd 2014

Hi Luiz,

using my newest weasis cq files and you WeasisSeriesXML.lua file weasis works great and conquest compresses MR data just fine.....

NOTE: I do use DGATE (1.4.17c, build Thu Nov 07 21:08:52 2013, bits 64)

Setting compression to 1.2.840.10008.1.2.4.57 shows:

[CONQUESTSRV1] [recompress]: recompressed with mode = j2 (strip=0)
[CONQUESTSRV1] [recompress]: recompressed with mode = j2 (strip=0)

Setting it to 1.2.840.10008.1.2.4.90 shows:

[CONQUESTSRV1] [recompress]: recompressed with mode = jk (strip=0)
[CONQUESTSRV1] [recompress]: recompressed with mode = jk (strip=0)

Not sure what goes wrong with you.

Marcel

jwest · Jan 23rd 2014

Hi, Marcel,.

I am using 1.4.17c with dgate 32 bits.
If you look at my log of first post of this topic we can see my conquest server seems compress the file as you posted.

Quote

[CONQUESTSRV1] Locating file:MAG0 184152\1.3.46.670589.30.1.6.1.116520970982.1387821732718.1_0001_000001_138782377104cd.dcm
[CONQUESTSRV1] Locating file:MAG0 184152\1.3.46.670589.30.1.6.1.116520970982.1387821732718.1_0001_000001_138782377104cd.dcm
[CONQUESTSRV1] Jasper compress started.
[CONQUESTSRV1] JPEG2K Lossless
[CONQUESTSRV1] , buffered data
[CONQUESTSRV1] , planes
[CONQUESTSRV1] , H = 1671, W = 1671, Bits = 12 in 16, Frames = 1,
[CONQUESTSRV1] color = MONOCHROME2
[CONQUESTSRV1] Jasper compress time 2 seconds.
[CONQUESTSRV1] [recompress]: recompressed with mode = jk (strip=0)

Display More

The problem is the image disapearing in Weasis.
Weasis load the image with progress percent. I can see the image on Weasis, but next the image disappears. Itested with 1.2.840.10008.1.2.4.57 and the same problem occurs.

I altered only weasisseriesxml.lua to include WadoTransferSyntaxUID="]].."1.2.840.10008.1.2.4.57" or WadoTransferSyntaxUID="]].."1.2.840.10008.1.2.4.90"
I don´t modify .cq files. I guess I can´t alter .cq to include transfersyntax. I can see on my log posted above in my first post of this topic that conquest server seems works ok.

But in both cases, I have java.io.EOFException in java log of weasis.

My Weasisserisxml.lua

Code

print('Content-Type: application/xml\n')


local patid = string.gsub(series2, ':.*$', '')
local seriesuid = string.gsub(series2, '^.*:', '')
local q = DicomObject:new()
q.QueryRetrieveLevel = 'IMAGE'
q.PatientID = patid
q.SeriesInstanceUID = seriesuid
q.SOPInstanceUID = ''
q.PatientBirthDate = ''
q.PatientName = ''
q.StudyInstanceUID = ''
q.StudyDescription = ''
q.StudyDate = ''
q.StudyTime = ''
q.SeriesDescription = ''
q.SeriesNumber = ''
q.Modality = ''
q.ImageNumber = ''
r = dicomquery(servercommand('get_param:MyACRNema'), 'IMAGE', q)


print([[
<?xml version="1.0" encoding="utf-8" ?>
<wado_query xmlns= "http://www.weasis.org/xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" wadoURL="]]..webscriptadress..[[" requireOnlySOPInstanceUID="false" overrideDicomTagsList="0x00000000" >
  <Patient PatientID="]]..patid..[[" PatientName="]]..r[0].PatientName..[[" PatientBirthDate="]]..r[0].PatientBirthDate..[[" >
    <Study StudyInstanceUID="]]..r[0].StudyInstanceUID..[[" StudyDescription="]]..r[0].StudyDescription..[[" StudyDate="]]..r[0].StudyDate..[[" StudyTime="]]..r[0].StudyTime..[[" >
      <Series SeriesInstanceUID="]]..r[0].SeriesInstanceUID..[[" WadoTransferSyntaxUID="]].."1.2.840.10008.1.2.4.57"..[[" SeriesDescription="]]..r[0].SeriesDescription..[[" SeriesNumber="]]..r[0].SeriesNumber..[[" Modality="]]..r[0].Modality..[[" >
]])


for i=0, #r-1 do
  print([[<Instance SOPInstanceUID="]]..r[i].SOPInstanceUID..[[" InstanceNumber="]]..i..[[" />]])
end


print([[
      </Series>
    </Study>
  </Patient>
</wado_query>
]])

Display More

If you see the log of my first post of this topic, Conquest seems work well, but there is an Exception on log of Java console.
I can see Weasis loading the image(It apperas onscreen of weasis) and after the loading of the image in the Weasis, it disappears.

NOTE: If I remove WadoTransferSyntaxUID from lua script all works well.

Do you agree I send you privatelly the main page link of the web server and you check by self, the problem of the image disapearing?
If yes, please send me your private e-mail.
My email is xxxxxx
Regards,
Luiz

marcelvanherk · Jan 24th 2014

Hi Luiz,

the problem is in the presence of private sequence 2001,9000 in the images. If I delete this using:

importConverter0 = delete 2001,9000

before I transmit the images to the DICOM server, the image shows allright in weasis with any compression. Somehow the send to weasis is affected by this sequence. The weasis log also shows it stop somewhere 3 levels inside a sequence.

Not sure yet what the solution is.

Marcel

marcelvanherk · Jan 25th 2014

Hi Luiz,

having an outdated dgate.dic in your server corrupted the data you get in. After you replaced it some things started to work better. Then Philips uses a private sequence that is still not recognized by conquest (it is not in the dictionary) and that is labeled as type 'UN', when the file is sent in any compressed syntax such as jpeg or jpeg2000. The type labels are NOT sent when you ask for the uncompressed images. Weasis does not like the type 'UN' on sequences, therefore it does not load the images when sent compressed. The solution is:

1) Make sure you always have the latest dgate.dic

2) Add this line to it in the correct place; after (2001,10F1):

(2001,9000) VERS="5" VR="SQ" VM="1-n" Keyword="PhilipsJunkSequence" Name="PhilipsJunkSequence"

3) Restart the server.

Then Weasis starts to work with all compressions!

Marcel

jwest · Jan 29th 2014

Mr Marcel,

My problem was solved.

Thanks for your time.

Luiz

Weasis Compression - the saga goes on

Participate now!

Share