Although your observation about the header changes is correct, the problems you encounter are most likely not caused by changing attribute 0008,0008 (Image Type).
The neccessary tag for identifying image type (IOD) is 0008,0016 (SOPClassUID) which is not altered because it is still 1.2.840.10008.5.1.4.1.1.2 (CTImageStorage)
If EFilm and other Applications do not sort these images correctly into studies/series then have a look at the following attributes:
0020,000D (StudyInstanceUID)
0020,000E (SeriesInstanceUID)
have a look whether these attributes are altered (maybe because of the correction algorithm for illegally space padded UIDs). If not post a complete header of two images formerly belonging to a series and after compression and retrieval from conquest do not anymore.
Btw.: the lossess in JpegLossess compression only refers to the pixeldata, not the header.
Regards,
Andreas