Posts by radtraveller

UBUNTU 10.04 64 bit g++ ver 4.4, build-essential 11.4 installed. Apache2 installed, phpmyadmin installed conquest MYSQL db created and privileges granted

g++ -I/usr/local/mysql/include -I/usr/include/mysql -DUNIX -DNATIVE_ENDIAN=1 -DHAVE_LIBJASPER -DHAVE_LIBJPEG -DUSEMYSQL -Wno-write-strings total.cpp -o dgate -lpthread -L/usr/local/mysql/lib -L/usr/lib/mysql -lmysqlclient -ljasper -ljpeg -Ijpeg-6c -Ljpeg-6c -Wno-multichar -m32
pkill -9 dgate
sleep 0.2s
cp dicom.ini.mysql dicom.ini
cp dicom.sql.mysql dicom.sql

sudo cp dgate /usr/lib/cgi-bin
sudo cp dicom.sql /usr/lib/cgi-bin
sudo cp dicom.ini.www /usr/lib/cgi-bin/dicom.ini
sudo cp sample.cq /usr/lib/cgi-bin

sudo cp ActiveFormProj1.ocx /var/www
sudo cp conquest.jpg /var/www

test@test-desktop:~/dcm/conquest$ sudo sh maklinux_mysql
/usr/bin/ld: skipping incompatible /usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../libmysqlclient.so when searching for -lmysqlclient
/usr/bin/ld: skipping incompatible /usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../libmysqlclient.a when searching for -lmysqlclient
/usr/bin/ld: skipping incompatible /usr/lib/libmysqlclient.so when searching for -lmysqlclient
/usr/bin/ld: skipping incompatible /usr/lib/libmysqlclient.a when searching for -lmysqlclient
/usr/bin/ld: cannot find -lmysqlclient
collect2: ld returned 1 exit status
cp: cannot stat `dgate': No such file or directory
test@test-desktop:~/dcm/conquest$

Guessing I need to look for a 32 bit libmysqlclient. Is that the right place for the -m32 flag?

Any idea when a usable beta would be available?

Radiology Report
By , Ref. Phys.
Name: name,name,name
Patient Name: name,name,name
Patient ID: MRN
Patient Birthdate: DOB
Patient Sex: F
Language of Content Item and Descendants
-
English
Person Observer Name
-
Radiologist, M.D.
Procedure Code
-
FEMUR RT 2 VIEW

This is copy/pasted from a pdf version of the SR. (formating is lost)

Some header info is in the report. (Missing any modality info and accession number)

No report body though.

[RADIOLOGY] UPACS THREAD 3: STARTED AT: Mon Aug 16 09:42:07 2010
[RADIOLOGY] Calling Application Title : "DCM4CHEE "
[RADIOLOGY] Called Application Title : "Radiology "
[RADIOLOGY] Application Context : "1.2.840.10008.3.1.1.1", PDU length: 16352
[RADIOLOGY] Presentation Context 0 "1.2.840.10008.5.1.4.1.1.88.11" 1
[RADIOLOGY] Presentation Context 1 "1.2.840.10008.5.1.4.1.1.88.11" 1
[RADIOLOGY] ***Error saving to SQL: name^name^name_MRN\SR_unknown\unknown\1.2.40.0.13.1.1.127.0.1.1.20100809135310921.36920.dcm
[RADIOLOGY] UPACS THREAD 3: ENDED AT: Mon Aug 16 09:42:12 2010
[RADIOLOGY] UPACS THREAD 3: TOTAL RUNNING TIME: 5 SECONDS
[RADIOLOGY]
[RADIOLOGY] UPACS THREAD 4: STARTED AT: Mon Aug 16 09:42:34 2010
[RADIOLOGY] Calling Application Title : "DCM4CHEE "
[RADIOLOGY] Called Application Title : "Radiology "
[RADIOLOGY] Application Context : "1.2.840.10008.3.1.1.1", PDU length: 16352
[RADIOLOGY] Presentation Context 0 "1.2.840.10008.5.1.4.1.1.88.11" 1
[RADIOLOGY] Presentation Context 1 "1.2.840.10008.5.1.4.1.1.88.11" 1
[RADIOLOGY] Written file: C:\conquest\data\name^name^name_MRN\SR_unknown\unknown\1.2.40.0.13.1.1.127.0.1.1.20100809135310921.36923.dcm
[RADIOLOGY] UPACS THREAD 4: ENDED AT: Mon Aug 16 09:42:39 2010
[RADIOLOGY] UPACS THREAD 4: TOTAL RUNNING TIME: 5 SECONDS

This is what conquest shows when receiving the SR. I am working on the chee to get a complete SR. But what I am getting, I can see in the above in a PDF version on the chee, yet in Conquest all I see in the embedded viewer is the code a couple posts up. When I retrieve the SR from kpacs, it will show that there is an SR on Conquest, but trying to view it in Kpacs just gives a black screen.

Am a bit over my head in this stuff but trying to learn. The help is appreciated.

So I am still working on DCM4CHEE to get the SR correct... I get a few parts of the ORU actually in a report (when looking at it as a PDF in DCM4CHEE)

I can send what is saved on DCM as an SR to Conquest and it shows up when I browse the database by name as Modality "SR"

But this is all that shows up when I look at the Object in the Conquest viewer :

(0002,0000) UL 194 # 4 MetaElementGroupLength
(0002,0001) OB \00\01 # 2 FileMetaInformationVersion
(0002,0002) UI [1.2.840.10008.5.1.4.1.1.88.11] # 30 MediaStorageSOPClassUID
(0002,0003) UI [1.2.40.0.13.1.1.127.0.1.1.20100810101611518.32773] # 50 MediaStorageSOPInstanceUID
(0002,0010) UI [1.2.840.10008.1.2] # 18 TransferSyntaxUID
(0002,0012) UI [1.2.826.0.1.3680043.2.135.1066.101] # 34 ImplementationClassUID
(0002,0013) SH [1.4.14/WIN32] # 12 ImplementationVersionName
(0008,0000) UL 202 # 4 IdentifyingGroupLength
(0008,0005) CS [ISO_IR 100] # 10 SpecificCharacterSet
(0008,0016) UI [1.2.840.10008.5.1.4.1.1.88.11] # 30 SOPClassUID
(0008,0018) UI [1.2.40.0.13.1.1.127.0.1.1.20100810101611518.32773] # 50 SOPInstanceUID
(0008,0020) DA (empty) # 0 StudyDate
(0008,0023) DA [20100810] # 8 ImageDate
(0008,0030) TM (empty) # 0 StudyTime
(0008,0033) TM [103900] # 6 ImageTime
(0008,0050) SH (empty) # 0 AccessionNumber
(0008,0060) CS [SR] # 2 Modality
(0008,0070) LO (empty) # 0 Manufacturer
(0008,0090) PN (empty) # 0 ReferringPhysicianName
(0008,1111) SQ (empty) # 0 ReferencedStudyComponentSequence
(0010,0000) UL 74 # 4 PatientGroupLength
(0010,0010) PN [PATIENT NAME] # 14 PatientName
(0010,0020) LO [PATIENTID ] # 10 PatientID
(0010,0021) LO (empty) # 0 IssuerOfPatientID
(0010,0030) DA [PATIENTDOB] # 8 PatientBirthDate
(0010,0040) CS [F ] # 2 PatientSex
(0020,0000) UL 142 # 4 ImageGroupLength
(0020,000d) UI [1.2.40.0.13.1.1.127.0.1.1.20100810101611518.32771] # 50 StudyInstanceUID
(0020,000e) UI [1.2.40.0.13.1.1.127.0.1.1.20100810101611518.32772] # 50 SeriesInstanceUID
(0020,0010) SH (empty) # 0 StudyID
(0020,0011) IS (empty) # 0 SeriesNumber
(0020,0013) IS [1 ] # 2 ImageNumber
(0040,0000) UL 1388 # 4 ModalityWorklistGroupLength
(0040,a040) CS [CONTAINER ] # 10 ValueType
(0040,a043) SQ (empty) # 0 ConceptNameCodeSequence
(0008,0000) UL 50 # 4 IdentifyingGroupLength
(0008,0100) SH [11528-7 ] # 8 CodeValue
(0008,0102) SH [LN] # 2 CodingSchemeDesignator
(0008,0104) LO [Radiology Report] # 16 CodeMeaning
(0040,a050) CS [SEPARATE] # 8 ContinuityOfContent
(0040,a073) SQ (empty) # 0 VerifyingObserverSequence
(0040,0000) UL 86 # 4 ModalityWorklistGroupLength
(0040,a027) LO [Verifying Organization] # 22 VerifyingOrganization
(0040,a030) DT [20100810103900] # 14 VerificationDateTime
(0040,a075) PN [RADIOLOGIST, M.D. ] # 18 VerifyingObserverName
(0040,a088) SQ (empty) # 0 VerifyingObserverIdentificationCodeSequence
(0040,a370) SQ (empty) # 0 ReferencedRequestSequence
(0008,0000) UL 16 # 4 IdentifyingGroupLength
(0008,0050) SH (empty) # 0 AccessionNumber
(0008,1110) SQ (empty) # 0 ReferencedStudySequence
(0032,0000) UL 132 # 4 StudyGroupLength
(0032,1060) LO [CHEST 1 VIEW] # 12 RequestedProcedureDescription
(0032,1064) SQ (empty) # 0 RequestedProcedureCodeSequence
(0008,0000) UL 60 # 4 IdentifyingGroupLength
(0008,0100) SH [4330150CHEST 1 VIEWCR ] # 22 CodeValue
(0008,0102) SH [CR] # 2 CodingSchemeDesignator
(0008,0104) LO [CHEST 1 VIEW] # 12 CodeMeaning
(0040,0000) UL 48 # 4 ModalityWorklistGroupLength
(0040,1001) SH (empty) # 0 RequestedProcedureID
(0040,2016) LO [MGGH00000979] # 12 PlacerOrderNumberImagingServiceRequest
(0040,2017) LO [MGGH00000979] # 12 FillerOrderNumberImagingServiceRequest
(0040,a375) SQ (empty) # 0 CurrentRequestedProcedureEvidenceSequence
(0040,a491) CS [COMPLETE] # 8 CompletionFlag
(0040,a493) CS [VERIFIED] # 8 VerificationFlag
(0040,a504) SQ (empty) # 0 ContentTemplateSequence
(0040,a730) SQ (empty) # 0 ContentSequence
(0040,0000) UL 268 # 4 ModalityWorklistGroupLength
(0040,a010) CS [HAS CONCEPT MOD ] # 16 RelationshipType
(0040,a040) CS [CODE] # 4 ValueType
(0040,a043) SQ (empty) # 0 ConceptNameCodeSequence
(0008,0000) UL 84 # 4 IdentifyingGroupLength
(0008,0100) SH [121049] # 6 CodeValue
(0008,0102) SH [DCM ] # 4 CodingSchemeDesignator
(0008,0104) LO [Language of Content Item and\n Descendants] # 50 CodeMeaning
(0040,a168) SQ (empty) # 0 ConceptCodeSequence
(0008,0000) UL 44 # 4 IdentifyingGroupLength
(0008,0100) SH [eng ] # 4 CodeValue
(0008,0102) SH [ISO639_2] # 8 CodingSchemeDesignator
(0008,0104) LO [English ] # 8 CodeMeaning
(0040,0000) UL 170 # 4 ModalityWorklistGroupLength
(0040,a010) CS [HAS OBS CONTEXT ] # 16 RelationshipType
(0040,a040) CS [PNAME ] # 6 ValueType
(0040,a043) SQ (empty) # 0 ConceptNameCodeSequence
(0008,0000) UL 54 # 4 IdentifyingGroupLength
(0008,0100) SH [121008] # 6 CodeValue
(0008,0102) SH [DCM ] # 4 CodingSchemeDesignator
(0008,0104) LO [Person Observer Name] # 20 CodeMeaning
(0040,a123) PN [RADIOLOGIST, M.D. ] # 18 PersonName
(0040,0000) UL 248 # 4 ModalityWorklistGroupLength
(0040,a010) CS [HAS OBS CONTEXT ] # 16 RelationshipType
(0040,a040) CS [CODE] # 4 ValueType
(0040,a043) SQ (empty) # 0 ConceptNameCodeSequence
(0008,0000) UL 48 # 4 IdentifyingGroupLength
(0008,0100) SH [121023] # 6 CodeValue
(0008,0102) SH [DCM ] # 4 CodingSchemeDesignator
(0008,0104) LO [Procedure Code] # 14 CodeMeaning
(0040,a168) SQ (empty) # 0 ConceptCodeSequence
(0008,0000) UL 60 # 4 IdentifyingGroupLength
(0008,0100) SH [4330150CHEST 1 VIEWCR ] # 22 CodeValue
(0008,0102) SH [CR] # 2 CodingSchemeDesignator
(0008,0104) LO [CHEST 1 VIEW] # 12 CodeMeaning

(Identifying names and number replaced with CAPS name)

If I export the SR object to kpacs, I get a black screen and no amount of w/l will show any text.

Looks like I am making some progress. If anyone has any hints or suggestions, I would really appreciate it.

Thanks
Matt

So /data/conquest/data/ actually exists and permissive for conquest read/write?

Had an odd thought.. (I am good for those)

AE* IP#1
AE* IP#2
AE* IP#3
AE* IP#4

ExportConverters = 1
ExportConverter0 = forward study to AE*

No idea if this would work.. Looks good though

Quote from nenad

any comment?

I'll take a stab. I've never tried wat you asked with same AE titles.. There may be a way to spoof the ae titles. I assume you have already tried setting them up in the ARCNEMA map (or Dicom Destinations tab) and it does not work?

As a last resort....

Set up four seperate instances of conquest, Con1-4.. run each, in each one set up the AE of one of your destination servers. Exportconverter to send studies from con1-4 to AE title with IP addr 1-4. On your main conquest, exportconverter send studies to conq 1-4.

bleh, inelegant solutions but should work if nothing else does.

US... Are those Jpegs or Dicom ?

I use Dicom Reader to import foreign CDs.

I do not have alot of experience with US images, but have you tried doing the drag n drop from source (either the DVD or the folder you copy them to on your HD) onto the Conquest interface?

Quote from R.Tillema

Hi Marcel

I have a simular problem.
By sending to the Conquest 1.4.15 it accepts 400 pictures/h, by receving from the Conquest 400/min. We use the NKI compression and are using an NAS and a 1 GBit network.
Can I change something so that it accepts the pictures faster?

Thanks for your help
Roelof

Can you post your my.cnf file?

Bump and hoping for an answer....

I am looking at maybe installing dcm4chee to use the hl7 to dicom SR function and then forwarding to Conquest.

I haven't gotten any response on the Mirth site regarding doing this using Mirth and their documentation is .. very sparse.

cheers

<edit>

NM see next post

Can you post a little more detail of how you are set up?

Did you tell Xserver that Conquest exists by entering the Conquest AEtitle, IP and port?

gedit /usr/lib/cgi-bin/dicom.ini

Make sure the port selection is an unused port. 104 is a pretty standard port usage for dicom devices.

# Network configuration: server name and TCP/IP port#
MyACRNema = "yourserverhere"
TCPPort = 104 (your port number here)

I don't have the linux version installed, but searching the forums, that should be where your dicom.ini resides.

Restart dgate, netstat and see if dgate is listed with the port you choose.

Quote from martijnbangor2

I have opened the netports output file.

Where should I pay attention to?

Thanks,

Martijn

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Connecting to host: localhost, port 1701
connect: Connection refused
Cannot connect to host localhost:1701
Is there a conquestd server running there?

is there a dgate process running with an open port?
netstat is a tool you can use to see if there is a process using a port..

sudo netstat -p > netports (or whatever you want to name the output file)

gedit netports (to read the output)

http://manpages.ubuntu.com/man…armic/man8/netstat.8.html

Hi Marcel,

Would it take an inordinate amount of effort to add support for Detached Study Management and Detached Results SOP?

Looking at the dearth of documentation for Mirth, I am slowly coming to the conclusion that I may have to install dcm4chee, use it as an HL7 to Dicom SR converter then push the SR to Conquest.

The commercial Pacs will only export the Report with SOP 1.2.840.10008.3.1.2.5.1 and will only Autoroute studies with 1.2.840.10008.3.1.2.3.1

Eventually I may have to set all modalities to transfer to Conquest first then export to the Commercial PACS because of the autorouting SOP but that still leaves me with the issue of getting the DICOM Structured Reports into Conquest.

Don't get me wrong, the commercial PACS has a lot of functionality that makes some things very easy, (one of the nicest I have worked with) but this particular issue is leaving me stumped.

netstat is your friend

I actually have Mirth Installed now on an ubuntu 10 Server with an MySQl database holding all my HL7.

I am however, just learning how to USE mirth

I just got my channels setup correctly for sending / receiving ORMs and ORUs.

Any pointers how to convert to a DICOM SR object? (i'll read up on that too)

And then... what?

In that SR format, would I be able to just set Conquest as a destination and push the SR Object to CQ?

(I just started messing with HL7 3 weeks ago still learning alot)

Any advice to get reports attached to the studies in Conquest? I have access to the Raw HL7 ORU messages.

Quote from duckhead

We've got a Windows XP instance of Conquest running, everything is working very well with it, except one little nagging thing. I have a FileNameSyntax of:

FileNameSyntax = %studydate[0,3]\%studydate[4,5]\%studydate[6,7]\%id\%V0018,0015\%sopuid_%image.dcm

All of that looks good, but we get the word unknown in our directory structure where the %V term is:

[DICOM] Written file: C:\DICOM_SERVER\Data\2010\04\14\12345\unknown\1.2.392.200036.9125.4.0.185592367.16262144.1038650276_000001.dcm

The odd thing is that this happens no matter what we put in there, including things like %modality, or anything else.

Any idea what's going on?

Jason

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Just a guess but try using %V0010,0020 in place of the %id in the statement?